Template: SRS043701_LANL_scaffold_6522 strand: + 46304-46418 ref: 46304-46418 Variable: SRS043701_LANL_scaffold_6522 strand: + 46106-46220 alnlen 114 mutations 19 involve-A 19 involve-T 0 46304 GGTGTCCTTTTCAGCGGTAATACGAATAATGGCGATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATGATTT :::::::::::: ::::: : ::: : ::::::::: ::: ::::::::::::::: :::::::: :: :::::::: ::::: ::::: :::: :::::: ::: :: ::: 46106 GGTGTCCTTTTCGGCGGTGCTGCGATTTATGGCGATCGTGCGGGCTTCGGTTATGCGGATACGAATTACGCCCCCTCGTATACGTTTGCGATTGTCGGCTCTCGGCTTTGTTTT Template: SRS043701_LANL_scaffold_6522 strand: + 46338-46414 ref: 46304-46418 Variable: SRS043701_LANL_scaffold_6522 strand: + 7643-7719 alnlen 76 mutations 14 involve-A 14 involve-T 0 46338 ATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATG ::: ::: ::::::::::::::: :::: : :: :::::::: :::::: :::: ::::: :::::: ::: :: 7643 ATCGTGCGGGCTTCGGTTATGCGCTTACGTCTTACGCCCCCTCGTATACGAGTGCGTATGTCGGCTCTCGGCTTTG