Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS043701_LANL_scaffold_6522 strand: + 46304-46418 ref: 46304-46418

Variable:  SRS043701_LANL_scaffold_6522 strand: + 46106-46220 alnlen 114 mutations 19 involve-A 19 involve-T 0

GGTGTCCTTTTCAGCGGTAATACGAATAATGGCGATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATGATTT (Template)
GGTGTCCTTTTCGGCGGTGCTGCGATTTATGGCGATCGTGCGGGCTTCGGTTATGCGGATACGAATTACGCCCCCTCGTATACGTTTGCGATTGTCGGCTCTCGGCTTTGTTTT (Variable)
Template:  SRS043701_LANL_scaffold_6522 strand: + 46338-46414 ref: 46304-46418

Variable:  SRS043701_LANL_scaffold_6522 strand: + 7643-7719 alnlen 76 mutations 14 involve-A 14 involve-T 0

ATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATG (Template)
ATCGTGCGGGCTTCGGTTATGCGCTTACGTCTTACGCCCCCTCGTATACGAGTGCGTATGTCGGCTCTCGGCTTTG (Variable)