Template:  SRS047044_WUGC_scaffold_1816 strand: + 29491-29600 ref: 29491-29600
Variable:  SRS047044_WUGC_scaffold_1816 strand: + 28685-28794 alnlen 109 mutations 17 involve-A 17 involve-T 0

29491      ATCAACCGAGAACAGTCCTGCGAACGCGTGGAATCTGAACTTTGGCGACGGCAACCTCAACAACTGGAACAATAAGGTTAAGGATAAGAATCATGTTCGCCCGGTGTCA 
           ::: ::::::  :::::::::::::::::::  ::::  :::::::: ::::  :::: :: :::::  :::::::::::::::::::  :: ::::::::::::::::
28685      ATCTACCGAGTCCAGTCCTGCGAACGCGTGGTTTCTGGGCTTTGGCGTCGGCTGCCTCTACTACTGGGGCAATAAGGTTAAGGATAAGGGTCGTGTTCGCCCGGTGTCA 
Template:  SRS047044_WUGC_scaffold_1816 strand: + 29524-29601 ref: 29491-29600
Variable:  SRS047044_WUGC_scaffold_1816 strand: + 28810-28887 alnlen 77 mutations 12 involve-A 12 involve-T 0

29524      TCTGAACTTTGGCGACGGCAACCTCAACAACTGGAACAATAAGGTTAAGGATAAGAATCATGTTCGCCCGGTGTCAG 
           ::::: ::::::::::::: :::::  :: ::::: :: :::::::  :: ::::  ::::::::::::::::::::
28810      TCTGAGCTTTGGCGACGGCTACCTCTTCACCTGGACCAGTAAGGTTTTGGGTAAGGGTCATGTTCGCCCGGTGTCAG