Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS048870_WUGC_scaffold_49190 strand: + 31184-31274 ref: 31184-31274

Variable:  SRS048870_WUGC_scaffold_49190 strand: + 30427-30517 alnlen 90 mutations 13 involve-A 13 involve-T 0

CTTCCAGCAGTTGGAACGTGAACTTCAACAACGGCAACGTCAACACGAACAACCGCCAGAACGCGAACCGGGTTCGTCCCCTCGCCGCAA (Template)
CTTCCAGCAGTTGGGGCGTGTACTTCAGCTACGGCAGCGTCGGCACGTACTACCGCCAGGGCGCGTACCGGGTTCGTCCCCTCGCCGCAA (Variable)