Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS049959_WUGC_scaffold_2163 strand: + 18290-18404 ref: 18290-18404

Variable:  SRS049959_WUGC_scaffold_2163 strand: + 17615-17729 alnlen 114 mutations 17 involve-A 15 involve-T 1

CCGAGAACAGTGCTACCAACGCATGGAATCTGAACCTCAACGACGGTAATACGAACAATTGGAACACTAAGGCCAGCAACACGAACAGAGTTAGGGCAGTGTCAGCACTATTTA (Template)
CCGAGAGCAGTGCTACCTTCGCATGGAATCTGAGCCTCGGCGACGGTTATACGAACCCTTGGTTCACTAAGGCCAGCAACGCGGGCAGAGTTAGGGCAGTGTCAGCATTTATTA (Variable)