Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS049959_WUGC_scaffold_42809 strand: + 8125-8240 ref: 8125-8240

Variable:  SRS049959_WUGC_scaffold_42809 strand: + 7940-8055 alnlen 115 mutations 17 involve-A 16 involve-T 0

TTCTTCGTGGTGTCCTGTTCAGCGGTAATGCGAATAACGGTGCGAATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCT (Template)
TTCTTCGTGGTGTCCTGTTCGGCGGTTATGCGCATAACGGTGCGCTTGCGGGCTTCGGCTATGCTTATTCGTCTAACGCCCCCTCGTATACGGGTGCGAACTTCGGCTCTCGCCT (Variable)