Template: SRS049995_LANL_scaffold_38903 strand: + 15584-15680 ref: 15582-15680 Variable: SRS049995_LANL_scaffold_38903 strand: + 14855-14951 alnlen 96 mutations 10 involve-A 8 involve-T 1 15584 TCCTCGAACGCGTGGTACGTGAACATGAACAACGGCAACGTGAACACGAACAACAAGACTACCGCAGGCAGGGTTCGTCCCGTTTCCGCAACAGAT ::::::: :::::::::::::: ::::::: ::::: :::: :::::::: :::::: ::::::::::::::::::::::::::::::: :::: 14855 TCCTCGAGCGCGTGGTACGTGAGCATGAACGGCGGCAGCGTGTACACGAACGGCAAGACGACCGCAGGCAGGGTTCGTCCCGTTTCCGCAATAGAT