Template:  SRS049995_LANL_scaffold_38903 strand: + 15584-15680 ref: 15582-15680
Variable:  SRS049995_LANL_scaffold_38903 strand: + 14855-14951 alnlen 96 mutations 10 involve-A 8 involve-T 1

15584      TCCTCGAACGCGTGGTACGTGAACATGAACAACGGCAACGTGAACACGAACAACAAGACTACCGCAGGCAGGGTTCGTCCCGTTTCCGCAACAGAT 
           ::::::: :::::::::::::: :::::::  ::::: :::: ::::::::  :::::: ::::::::::::::::::::::::::::::: ::::
14855      TCCTCGAGCGCGTGGTACGTGAGCATGAACGGCGGCAGCGTGTACACGAACGGCAAGACGACCGCAGGCAGGGTTCGTCCCGTTTCCGCAATAGAT