Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS049995_LANL_scaffold_38903 strand: + 15584-15680 ref: 15582-15680

Variable:  SRS049995_LANL_scaffold_38903 strand: + 14855-14951 alnlen 96 mutations 10 involve-A 8 involve-T 1

TCCTCGAACGCGTGGTACGTGAACATGAACAACGGCAACGTGAACACGAACAACAAGACTACCGCAGGCAGGGTTCGTCCCGTTTCCGCAACAGAT (Template)
TCCTCGAGCGCGTGGTACGTGAGCATGAACGGCGGCAGCGTGTACACGAACGGCAAGACGACCGCAGGCAGGGTTCGTCCCGTTTCCGCAATAGAT (Variable)