Template: SRS049995_LANL_scaffold_40118 strand: + 17878-18058 ref: 17878-18057 Variable: SRS049995_LANL_scaffold_40118 strand: + 16468-16648 alnlen 180 mutations 31 involve-A 26 involve-T 1 17878 TCCCTGCGTCGGGGTATCGCAACTATTCCAATGGCGGGGCGAACAACGTTGGCAGCTACGGCTACTGTTGGTCGGCGGTTCCGAACAACCAGAACAACGGTCGCAACCTGAACTTCAACTCGTCGAACGTGAACCCGTTGAACAACAACAATCGGGCGTACGGGTTTGGGGTGCGTTCTT ::::::::::::::: :::: ::: :::: :::::::::::::: ::::::: ::::::: ::::::::::::::::::: ::: :::: :: ::::: ::: :::: ::::: ::::::: :::: :::::::: : :: :: ::::: :: :::::::::: ::::::::: 16468 TCCCTGCGTCGGGGTCTCGCGACTGTTCCGGTGGCGGGGCGAACAGCGTTGGCTTCTACGGCGTCTGTTGGTCGGCGGTTCCGTACAGCCAGTACCACGGTTGCACCCTGGACTTCTCCTCGTCGTCCGTGTACCCGTTGCTCTACTACTCTCGGGTGTGCGGGTTTGGGTTGCGTTCTT