Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS049995_LANL_scaffold_40118 strand: + 17878-18058 ref: 17878-18057

Variable:  SRS049995_LANL_scaffold_40118 strand: + 16468-16648 alnlen 180 mutations 31 involve-A 26 involve-T 1

TCCCTGCGTCGGGGTATCGCAACTATTCCAATGGCGGGGCGAACAACGTTGGCAGCTACGGCTACTGTTGGTCGGCGGTTCCGAACAACCAGAACAACGGTCGCAACCTGAACTTCAACTCGTCGAACGTGAACCCGTTGAACAACAACAATCGGGCGTACGGGTTTGGGGTGCGTTCTT (Template)
TCCCTGCGTCGGGGTCTCGCGACTGTTCCGGTGGCGGGGCGAACAGCGTTGGCTTCTACGGCGTCTGTTGGTCGGCGGTTCCGTACAGCCAGTACCACGGTTGCACCCTGGACTTCTCCTCGTCGTCCGTGTACCCGTTGCTCTACTACTCTCGGGTGTGCGGGTTTGGGTTGCGTTCTT (Variable)