Template: SRS050299_LANL_scaffold_5926 strand: + 39751-39865 ref: 39751-39865 Variable: SRS050299_LANL_scaffold_5926 strand: + 39566-39680 alnlen 114 mutations 13 involve-A 12 involve-T 0 39751 GTGCCCTCTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATACGAATAATCGCTCCTCGAACTCGAATGCGAACATTGGGTTCCGCCTATACCGTT ::::::::::::::::: ::::::::::::::::: :::::::::::::: :::: ::::::::::::::: ::: ::::: ::::::: ::::::::::::: : ::::: 39566 GTGCCCTCTTGTCTGCTTCTGCGAATAATGGTGCGACTGCGGGTTTCGGTTCTCTGTTTACGAATAATCGCTCTTCGTACTCGTCTGCGAACTTTGGGTTCCGCCTGTGCCGTT