Template: SRS050422_LANL_scaffold_42845 strand: - 13552-13668 ref: 13553-13669 Variable: SRS050422_LANL_scaffold_42845 strand: - 14209-14325 alnlen 116 mutations 11 involve-A 11 involve-T 0 13668 AACGCTTGCCGATTGTCTCTGGCAGTTACAACAACACTTCGAACGCTGGCCCTTCCGCGTTGAACTTGAACAACCCACGTTCGAACGTCAGGACGAACATCGGCTTCTTCTCCGCT (revcomp) :::::::::::::::::::::::::::::::: :: :::::: ::::::::::::::::::: ::::: : ::::::::::: ::::: :: ::::: ::::::::::::::::: 14325 AACGCTTGCCGATTGTCTCTGGCAGTTACAACTACGCTTCGAGCGCTGGCCCTTCCGCGTTGTACTTGCTCTACCCACGTTCGTACGTCGGGGCGAACTTCGGCTTCTTCTCCGCT (revcomp)