Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS050422_LANL_scaffold_42845 strand: - 13552-13668 ref: 13553-13669

Variable:  SRS050422_LANL_scaffold_42845 strand: - 14209-14325 alnlen 116 mutations 11 involve-A 11 involve-T 0

AACGCTTGCCGATTGTCTCTGGCAGTTACAACAACACTTCGAACGCTGGCCCTTCCGCGTTGAACTTGAACAACCCACGTTCGAACGTCAGGACGAACATCGGCTTCTTCTCCGCT (Template)
AACGCTTGCCGATTGTCTCTGGCAGTTACAACTACGCTTCGAGCGCTGGCCCTTCCGCGTTGTACTTGCTCTACCCACGTTCGTACGTCGGGGCGAACTTCGGCTTCTTCTCCGCT (Variable)