Template:  SRS050422_LANL_scaffold_49109 strand: + 3626-3740 ref: 3626-3740
Variable:  SRS050422_LANL_scaffold_49109 strand: + 2989-3103 alnlen 114 mutations 12 involve-A 12 involve-T 0

3626       GGTTGCTTATTCGTGGCGGTAATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCTT 
           :::::::: :::::::::::  :::::::: ::::::: ::::::::::::::  :::: :::::: : ::::::::::::::::: ::::: :::::::::::::::::::::
2989       GGTTGCTTGTTCGTGGCGGTTCTTATGGTACTGGCGGTTACGCCGGGGAGGCTTTCGGCGATTTCACCGACCCGCGTTCTATCTCCCATGTGCATGTGGGGCTGTTTTCCGCTT