Template: SRS050422_LANL_scaffold_49109 strand: + 3626-3740 ref: 3626-3740 Variable: SRS050422_LANL_scaffold_49109 strand: + 2989-3103 alnlen 114 mutations 12 involve-A 12 involve-T 0 3626 GGTTGCTTATTCGTGGCGGTAATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCTT :::::::: ::::::::::: :::::::: ::::::: :::::::::::::: :::: :::::: : ::::::::::::::::: ::::: ::::::::::::::::::::: 2989 GGTTGCTTGTTCGTGGCGGTTCTTATGGTACTGGCGGTTACGCCGGGGAGGCTTTCGGCGATTTCACCGACCCGCGTTCTATCTCCCATGTGCATGTGGGGCTGTTTTCCGCTT