Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS050422_LANL_scaffold_49109 strand: + 3626-3740 ref: 3626-3740

Variable:  SRS050422_LANL_scaffold_49109 strand: + 2989-3103 alnlen 114 mutations 12 involve-A 12 involve-T 0

GGTTGCTTATTCGTGGCGGTAATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCTT (Template)
GGTTGCTTGTTCGTGGCGGTTCTTATGGTACTGGCGGTTACGCCGGGGAGGCTTTCGGCGATTTCACCGACCCGCGTTCTATCTCCCATGTGCATGTGGGGCTGTTTTCCGCTT (Variable)