Template: SRS050752_LANL_scaffold_9299 strand: - 4331-4443 ref: 4331-4445 Variable: SRS050752_LANL_scaffold_9299 strand: - 46980-47092 alnlen 112 mutations 10 involve-A 9 involve-T 1 4443 GGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACC (revcomp) :::::::::::::::::: :::::::: :::::::::::::::::::::::: ::::: ::::::::::::::::::: :::::: :::: :: ::::::::::::: : :: 47092 GGTGCCCTTTTGTCTGCTTATGCGAATTATGGTGCGAATGCGGGTTTCGGTTGTCTGACTGCGAATAATCGTTCCTCGCATGCGAGTGCGGACGTTGGGTTCCGCTTGTGCC (revcomp) Template: SRS050752_LANL_scaffold_9299 strand: - 4330-4444 ref: 4331-4445 Variable: SRS050752_LANL_scaffold_9299 strand: - 4532-4646 alnlen 114 mutations 15 involve-A 14 involve-T 1 4444 TGGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACCG (revcomp) ::::::::::::::::::: ::::: :: :::::::: ::::::::::::::: :::: ::::: ::: :::::::::: :::: :::: :::::::::::::::: : ::: 4646 TGGTGCCCTTTTGTCTGCTTATGCGCATTATGGTGCGTATGCGGGTTTCGGTTCTCTGCATGCGTATAGTCGTTCCTCGGTTGCGGCTGCGTACATTGGGTTCCGCTTGTGCCG (revcomp) Template: SRS050752_LANL_scaffold_9299 strand: - 4352-4443 ref: 4331-4445 Variable: SRS050752_LANL_scaffold_9299 strand: - 47097-47188 alnlen 91 mutations 12 involve-A 11 involve-T 0 4443 GGTGCCCTTTTGTCTGCTAATGCGAATAA-TGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCG (revcomp) :::::::::::::::::: :::::: : ::::::: :::::::::::::::::::: :::: ::: ::::::::::: :::: ::::: 47188 GGTGCCCTTTTGTCTGCTTATGCGAGTTTCTGGTGCGTATGCGGGTTTCGGTTATCTGGCTGCGGATAGTCGTTCCTCGACTGCGTATGCG (revcomp)