Template:  SRS050752_LANL_scaffold_9299 strand: - 4331-4443 ref: 4331-4445
Variable:  SRS050752_LANL_scaffold_9299 strand: - 46980-47092 alnlen 112 mutations 10 involve-A 9 involve-T 1

4443       GGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACC (revcomp)
           :::::::::::::::::: :::::::: :::::::::::::::::::::::: ::::: ::::::::::::::::::: :::::: :::: :: ::::::::::::: : ::
47092      GGTGCCCTTTTGTCTGCTTATGCGAATTATGGTGCGAATGCGGGTTTCGGTTGTCTGACTGCGAATAATCGTTCCTCGCATGCGAGTGCGGACGTTGGGTTCCGCTTGTGCC (revcomp)
Template:  SRS050752_LANL_scaffold_9299 strand: - 4330-4444 ref: 4331-4445
Variable:  SRS050752_LANL_scaffold_9299 strand: - 4532-4646 alnlen 114 mutations 15 involve-A 14 involve-T 1

4444       TGGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACCG (revcomp)
           ::::::::::::::::::: ::::: :: :::::::: ::::::::::::::: :::: ::::: ::: ::::::::::  ::::  :::: :::::::::::::::: : :::
4646       TGGTGCCCTTTTGTCTGCTTATGCGCATTATGGTGCGTATGCGGGTTTCGGTTCTCTGCATGCGTATAGTCGTTCCTCGGTTGCGGCTGCGTACATTGGGTTCCGCTTGTGCCG (revcomp)
Template:  SRS050752_LANL_scaffold_9299 strand: - 4352-4443 ref: 4331-4445
Variable:  SRS050752_LANL_scaffold_9299 strand: - 47097-47188 alnlen 91 mutations 12 involve-A 11 involve-T 0

4443       GGTGCCCTTTTGTCTGCTAATGCGAATAA-TGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCG (revcomp)
           :::::::::::::::::: :::::: :   ::::::: ::::::::::::::::::::  :::: ::: ::::::::::: :::: :::::
47188      GGTGCCCTTTTGTCTGCTTATGCGAGTTTCTGGTGCGTATGCGGGTTTCGGTTATCTGGCTGCGGATAGTCGTTCCTCGACTGCGTATGCG (revcomp)