Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS050752_LANL_scaffold_9299 strand: - 4331-4443 ref: 4331-4445

Variable:  SRS050752_LANL_scaffold_9299 strand: - 46980-47092 alnlen 112 mutations 10 involve-A 9 involve-T 1

GGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACC (Template)
GGTGCCCTTTTGTCTGCTTATGCGAATTATGGTGCGAATGCGGGTTTCGGTTGTCTGACTGCGAATAATCGTTCCTCGCATGCGAGTGCGGACGTTGGGTTCCGCTTGTGCC (Variable)
Template:  SRS050752_LANL_scaffold_9299 strand: - 4330-4444 ref: 4331-4445

Variable:  SRS050752_LANL_scaffold_9299 strand: - 4532-4646 alnlen 114 mutations 15 involve-A 14 involve-T 1

TGGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACCG (Template)
TGGTGCCCTTTTGTCTGCTTATGCGCATTATGGTGCGTATGCGGGTTTCGGTTCTCTGCATGCGTATAGTCGTTCCTCGGTTGCGGCTGCGTACATTGGGTTCCGCTTGTGCCG (Variable)
Template:  SRS050752_LANL_scaffold_9299 strand: - 4352-4443 ref: 4331-4445

Variable:  SRS050752_LANL_scaffold_9299 strand: - 47097-47188 alnlen 91 mutations 12 involve-A 11 involve-T 0

GGTGCCCTTTTGTCTGCTAATGCGAATAA-TGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCG (Template)
GGTGCCCTTTTGTCTGCTTATGCGAGTTTCTGGTGCGTATGCGGGTTTCGGTTATCTGGCTGCGGATAGTCGTTCCTCGACTGCGTATGCG (Variable)