Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS050925_LANL_scaffold_73778 strand: + 2348-2436 ref: 2348-2436

Variable:  SRS050925_LANL_scaffold_73778 strand: + 1799-1887 alnlen 88 mutations 16 involve-A 15 involve-T 0

GCTATAGCGCTAACAATGTTCAGTATGTCAATGACGATGGCAACGTCAACTACAACTGGTGTAGCAATGATTTTGGCGTGCGTCCGTT (Template)
GCTATGGCGCTAACGATGTTTTGTATGTCCTTGGCGATGGCGGCGTCCGCTACTTCTGGTGTAGCGTTGGTTTTGGCGTGCGTCCGTT (Variable)