Template: SRS051031_LANL_scaffold_4812 strand: + 4468-4576 ref: 4468-4576 Variable: SRS051031_LANL_scaffold_4812 strand: + 4253-4361 alnlen 108 mutations 17 involve-A 17 involve-T 0 4468 CGTATGTCGGCGGCAACTGGAACAATGACCTTATGGTCGGTCCTTTCTACGCTAATCTGAACAATACGGCGTCCAATTCGAACTCGAACAATGGCGCGGCTCTATCTT ::: :::::::::: :::: :::::::::: ::::::::::::::: ::::: :::: :: :: ::::::::: :::: ::::: : ::::::::::::: :::: 4253 CGTGTGTCGGCGGCCGCTGGGGCAATGACCTTTTGGTCGGTCCTTTCTGCGCTACTCTGGACGATGCGGCGTCCAGTTCGTACTCGGCCTATGGCGCGGCTCTCTCTT