Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS051031_LANL_scaffold_4812 strand: + 4468-4576 ref: 4468-4576

Variable:  SRS051031_LANL_scaffold_4812 strand: + 4253-4361 alnlen 108 mutations 17 involve-A 17 involve-T 0

CGTATGTCGGCGGCAACTGGAACAATGACCTTATGGTCGGTCCTTTCTACGCTAATCTGAACAATACGGCGTCCAATTCGAACTCGAACAATGGCGCGGCTCTATCTT (Template)
CGTGTGTCGGCGGCCGCTGGGGCAATGACCTTTTGGTCGGTCCTTTCTGCGCTACTCTGGACGATGCGGCGTCCAGTTCGTACTCGGCCTATGGCGCGGCTCTCTCTT (Variable)