Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS052027_LANL_scaffold_10277 strand: - 14481-14595 ref: 14482-14596

Variable:  SRS052027_LANL_scaffold_10277 strand: - 14674-14788 alnlen 114 mutations 14 involve-A 14 involve-T 0

GGGGTGTGTTGTTCAGCGGTTCTTCGAATAATGGTGCGAATGCAGGTGTCAGCTACTCGAATACGAATAATACGGCGTCGAATACGAATGCGAATATCGGTTCTCAGCTATGCT (Template)
GGGGTGTGTTGTTCGGCGGTTCTTCGCATTATGGTGCGAATGCGGGTGTCGGCTACTCGAATACGAGTAATGCGGCGTCGTATACGTCTGCGCATGTCGGTTCTCGGCTTTGCT (Variable)
Template:  SRS052027_LANL_scaffold_10277 strand: - 14481-14555 ref: 14482-14596

Variable:  SRS052027_LANL_scaffold_10277 strand: - 52160-52234 alnlen 74 mutations 15 involve-A 15 involve-T 0

TGCAGGTGTCAGCTACTCGAATACGAATAATACGGCGTCGAATACGAATGCGAATATCGGTTCTCAGCTATGCT (Template)
TGCGGGTGTCGGCTGCTCGTATGCGAGTCATGCGGCGTCGTCTACGGCTGCGAATTTCGGTTCTCGGCTTTGCT (Variable)