Template:  SRS052027_LANL_scaffold_25529 strand: + 25867-25982 ref: 25867-25982
Variable:  SRS052027_LANL_scaffold_25529 strand: + 25322-25437 alnlen 115 mutations 26 involve-A 26 involve-T 0

25867      CGGTGTCCTGTTCAGCGGTAATGCGAATAACAGCTCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCAGGTCTCGCCAATGATTT 
           ::::::::::::: :::::  ::::: : :: :::::  :::::::::::::: ::::  ::::  : :: ::::::::  ::::  ::::  : :: :::::::::  :: :::
25322      CGGTGTCCTGTTCGGCGGTTCTGCGATTCACGGCTCGGCTGCCGGTTTTGCGTGTGCGCTTTCGGCTTACGCGCCCTCGCTTACGGGTGCGCGTGTCGGGTCTCGCCTTTGCTTT