Template:  SRS052027_LANL_scaffold_4315 strand: + 2644-2759 ref: 2644-2759
Variable:  SRS052027_LANL_scaffold_4315 strand: + 1999-2114 alnlen 115 mutations 13 involve-A 13 involve-T 0

2644       GCGGCTGCCGTTATGCGGGGGCAGGTGGAACAATGGCTCCAACGCCGGCGTCTTCAACGTCAATCTGAACAATCCCCGCTCGAACTCCAACTCCAACGTCGGCTTCCGCTCCGCT 
           :::::::::::: ::::::::: :::::  :::::::::: :::::::::::::: ::::: :::::  : ::::::::::: ::::: :::::: :::::::::::::::::::
1999       GCGGCTGCCGTTCTGCGGGGGCGGGTGGGGCAATGGCTCCTACGCCGGCGTCTTCTACGTCTATCTGCTCGATCCCCGCTCGTACTCCTACTCCAGCGTCGGCTTCCGCTCCGCT