Template: SRS052027_LANL_scaffold_4315 strand: + 2644-2759 ref: 2644-2759 Variable: SRS052027_LANL_scaffold_4315 strand: + 1999-2114 alnlen 115 mutations 13 involve-A 13 involve-T 0 2644 GCGGCTGCCGTTATGCGGGGGCAGGTGGAACAATGGCTCCAACGCCGGCGTCTTCAACGTCAATCTGAACAATCCCCGCTCGAACTCCAACTCCAACGTCGGCTTCCGCTCCGCT :::::::::::: ::::::::: ::::: :::::::::: :::::::::::::: ::::: ::::: : ::::::::::: ::::: :::::: ::::::::::::::::::: 1999 GCGGCTGCCGTTCTGCGGGGGCGGGTGGGGCAATGGCTCCTACGCCGGCGTCTTCTACGTCTATCTGCTCGATCCCCGCTCGTACTCCTACTCCAGCGTCGGCTTCCGCTCCGCT