Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS052027_LANL_scaffold_4315 strand: + 2644-2759 ref: 2644-2759

Variable:  SRS052027_LANL_scaffold_4315 strand: + 1999-2114 alnlen 115 mutations 13 involve-A 13 involve-T 0

GCGGCTGCCGTTATGCGGGGGCAGGTGGAACAATGGCTCCAACGCCGGCGTCTTCAACGTCAATCTGAACAATCCCCGCTCGAACTCCAACTCCAACGTCGGCTTCCGCTCCGCT (Template)
GCGGCTGCCGTTCTGCGGGGGCGGGTGGGGCAATGGCTCCTACGCCGGCGTCTTCTACGTCTATCTGCTCGATCCCCGCTCGTACTCCTACTCCAGCGTCGGCTTCCGCTCCGCT (Variable)