Template: SRS052697_LANL_scaffold_12111 strand: + 92809-92926 ref: 92808-92933 Variable: SRS052697_LANL_scaffold_12111 strand: - 39308-39425 alnlen 117 mutations 13 involve-A 12 involve-T 0 (on different strand) 92809 TACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT ::::::::::::::::::: :::::::::: :::::::: :::: ::::::::::::::::::::::: :: :::::::: : ::::: :::::::::::::::::::::: :: 39425 TACTGGAGTAGCAGTGAGAGCAGTCAGAACTACAGCTGGCTCGTGTACTTTAGTAATGGCAACTTCAACTACCTCAACAAGTGCTACAGTGTCATGGTGAGAGCGGTTGCAGCATTT (revcomp) Template: SRS052697_LANL_scaffold_12111 strand: + 92808-92933 ref: 92808-92933 Variable: SRS052697_LANL_scaffold_12111 strand: + 92037-92162 alnlen 125 mutations 19 involve-A 16 involve-T 0 92808 GTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTTAACGATA :::::::::::::::::::: :::::::: :::::::::: ::::: :::::::: :::: :::::: :: :: : :::::::: :::: :::::::::::::::::::::: :: : ::: 92037 GTACTGGAGTAGCAGTGAGAGCAGTCAGAGCAACAGCTGGTACGTGTACTTTAGTCTTGGCTACTTCAGCAGCACCTACAAGTACGGCAGTTTCATGGTGAGAGCGGTTGCAGCATTTTAGTATA