Template:  SRS052697_LANL_scaffold_12111 strand: + 92809-92926 ref: 92808-92933
Variable:  SRS052697_LANL_scaffold_12111 strand: - 39308-39425 alnlen 117 mutations 13 involve-A 12 involve-T 0
(on different strand)
92809      TACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT 
           ::::::::::::::::::: :::::::::: ::::::::  :::: ::::::::::::::::::::::: ::  :::::::: : :::::  :::::::::::::::::::::: ::
39425      TACTGGAGTAGCAGTGAGAGCAGTCAGAACTACAGCTGGCTCGTGTACTTTAGTAATGGCAACTTCAACTACCTCAACAAGTGCTACAGTGTCATGGTGAGAGCGGTTGCAGCATTT (revcomp)
Template:  SRS052697_LANL_scaffold_12111 strand: + 92808-92933 ref: 92808-92933
Variable:  SRS052697_LANL_scaffold_12111 strand: + 92037-92162 alnlen 125 mutations 19 involve-A 16 involve-T 0

92808      GTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTTAACGATA 
           :::::::::::::::::::: :::::::: :::::::::: ::::: ::::::::  :::: :::::: :: :: : ::::::::  ::::  :::::::::::::::::::::: :: :  :::
92037      GTACTGGAGTAGCAGTGAGAGCAGTCAGAGCAACAGCTGGTACGTGTACTTTAGTCTTGGCTACTTCAGCAGCACCTACAAGTACGGCAGTTTCATGGTGAGAGCGGTTGCAGCATTTTAGTATA