Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS052697_LANL_scaffold_12111 strand: + 92809-92926 ref: 92808-92933

Variable:  SRS052697_LANL_scaffold_12111 strand: - 39308-39425 alnlen 117 mutations 13 involve-A 12 involve-T 0

TACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (Template)
TACTGGAGTAGCAGTGAGAGCAGTCAGAACTACAGCTGGCTCGTGTACTTTAGTAATGGCAACTTCAACTACCTCAACAAGTGCTACAGTGTCATGGTGAGAGCGGTTGCAGCATTT (Variable)
Template:  SRS052697_LANL_scaffold_12111 strand: + 92808-92933 ref: 92808-92933

Variable:  SRS052697_LANL_scaffold_12111 strand: + 92037-92162 alnlen 125 mutations 19 involve-A 16 involve-T 0

GTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTTAACGATA (Template)
GTACTGGAGTAGCAGTGAGAGCAGTCAGAGCAACAGCTGGTACGTGTACTTTAGTCTTGGCTACTTCAGCAGCACCTACAAGTACGGCAGTTTCATGGTGAGAGCGGTTGCAGCATTTTAGTATA (Variable)