Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS052697_LANL_scaffold_15219 strand: + 28479-28611 ref: 28479-28611

Variable:  SRS052697_LANL_scaffold_15219 strand: + 28245-28377 alnlen 132 mutations 30 involve-A 29 involve-T 1

GTTTCTTAATTACTAAATTAGGCAGTAAATGGAATAATGGCTCTAATTGCAGTTTCAATCTGAATGGTAATAATACCTCTGGTAATCGCAATCGTAATATCAGCAGTCACTTACTATATGTGCATATAAAAA (Template)
GTTTCTTGGTTGCTATATTGGGCGGTGAATGGAGTAGTGGCTCTGATTGCGGTTTCTATCTGCATGGTTATACTGCCTCTGGTGGTCGCGGTCGTAGTATCGGCGGTCGCTTGCTGTATGTGCCTCAAACAA (Variable)