Template: SRS052697_LANL_scaffold_26371 strand: + 16585-16697 ref: 16585-16697 Variable: SRS052697_LANL_scaffold_26371 strand: + 16040-16152 alnlen 112 mutations 14 involve-A 14 involve-T 0 16585 GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT :::::::::::::::::: :::::::::: ::::: :::::::::::::: :::: :::::::: :: ::::::::::: :: :::::::::::::::::: ::: : :: 16040 GGTGTCTTGTTCGGCGGTTTTGCGAATAACGGCGCGGGTGCCGGGCTTTCGTGCGCGTATACGAATTACGCGGCTACGAATGCGGATGCGAATATCGGCTCTCGGCTTTGCT