Template: SRS053335_LANL_scaffold_26347 strand: - 5784-5891 ref: 5785-5892 Variable: SRS053335_LANL_scaffold_26347 strand: - 6406-6513 alnlen 107 mutations 11 involve-A 10 involve-T 0 5891 GCGTTCTACTCTGGTGGCAAATGGAACAACGGTGCCAACGCGGGCGTCTTCGCTTTGAACTACAACACCCGCGCGAACTCGAACTGGAATCTGGGCTTTCGCTCCGC (revcomp) ::::::::::::::::::: ::::: : :::::::: :::::::::::::::::::::::::: :: :::::::: ::::: ::: : :::::::::::::::::: 6513 GCGTTCTACTCTGGTGGCAGATGGAGCCACGGTGCCTACGCGGGCGTCTTCGCTTTGAACTACGACCCCCGCGCGTACTCGCACTCGGGTCTGGGCTTTCGCTCCGC (revcomp)