Template:  SRS053335_LANL_scaffold_26347 strand: - 5784-5891 ref: 5785-5892
Variable:  SRS053335_LANL_scaffold_26347 strand: - 6406-6513 alnlen 107 mutations 11 involve-A 10 involve-T 0

5891       GCGTTCTACTCTGGTGGCAAATGGAACAACGGTGCCAACGCGGGCGTCTTCGCTTTGAACTACAACACCCGCGCGAACTCGAACTGGAATCTGGGCTTTCGCTCCGC (revcomp)
           ::::::::::::::::::: ::::: : :::::::: :::::::::::::::::::::::::: :: :::::::: ::::: ::: :  ::::::::::::::::::
6513       GCGTTCTACTCTGGTGGCAGATGGAGCCACGGTGCCTACGCGGGCGTCTTCGCTTTGAACTACGACCCCCGCGCGTACTCGCACTCGGGTCTGGGCTTTCGCTCCGC (revcomp)