Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS053335_LANL_scaffold_26347 strand: - 5784-5891 ref: 5785-5892

Variable:  SRS053335_LANL_scaffold_26347 strand: - 6406-6513 alnlen 107 mutations 11 involve-A 10 involve-T 0

GCGTTCTACTCTGGTGGCAAATGGAACAACGGTGCCAACGCGGGCGTCTTCGCTTTGAACTACAACACCCGCGCGAACTCGAACTGGAATCTGGGCTTTCGCTCCGC (Template)
GCGTTCTACTCTGGTGGCAGATGGAGCCACGGTGCCTACGCGGGCGTCTTCGCTTTGAACTACGACCCCCGCGCGTACTCGCACTCGGGTCTGGGCTTTCGCTCCGC (Variable)