Template:  SRS053398_LANL_scaffold_3283 strand: - 1510-1622 ref: 1511-1623
Variable:  SRS053398_LANL_scaffold_3283 strand: - 2224-2336 alnlen 112 mutations 11 involve-A 11 involve-T 0

1622       TCAACCGAGAACAGTCCTGCGAACGCGTGGAATCTGAACTTTGGCGACGGCAACCTCAACAACTGGAACAATAAGGTTAAGGATAAGAATCATGTTCGCCCGGTGTCAGCAT (revcomp)
           :: :::::: :::::::::::  :::::::::::::: :::::::::::::  :::: ::::::::  ::::::::::::::::::::::: ::::::::::::::::::::
2336       TCTACCGAGGACAGTCCTGCGTTCGCGTGGAATCTGAGCTTTGGCGACGGCGCCCTCCACAACTGGTTCAATAAGGTTAAGGATAAGAATCGTGTTCGCCCGGTGTCAGCAT (revcomp)