Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS053398_LANL_scaffold_3283 strand: - 1510-1622 ref: 1511-1623

Variable:  SRS053398_LANL_scaffold_3283 strand: - 2224-2336 alnlen 112 mutations 11 involve-A 11 involve-T 0

TCAACCGAGAACAGTCCTGCGAACGCGTGGAATCTGAACTTTGGCGACGGCAACCTCAACAACTGGAACAATAAGGTTAAGGATAAGAATCATGTTCGCCCGGTGTCAGCAT (Template)
TCTACCGAGGACAGTCCTGCGTTCGCGTGGAATCTGAGCTTTGGCGACGGCGCCCTCCACAACTGGTTCAATAAGGTTAAGGATAAGAATCGTGTTCGCCCGGTGTCAGCAT (Variable)