Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS054956_LANL_scaffold_45718 strand: + 11503-11630 ref: 11503-11630

Variable:  SRS054956_LANL_scaffold_45718 strand: + 10870-10997 alnlen 127 mutations 14 involve-A 13 involve-T 0

GGCTTGCACGCGCTCATTGGCGGTGGCAACTGGAACAACGGGGTTCACGATGGTTCGCGGACTGTGAATTGCAACAATTATCCGTGGAACGTGAACACGAACATTGGCGTGTGGTGCGTCTGTGACT (Template)
GGCTTGCACGCGCTCCTTGGCGGTGGCAGCTGGAGCGACGGGGTTCACGCTGGTTCGCGGACTGTGTTTTGCAACGCTTATCCATGGAGCGTGAACACGGGCGTTGGCGTGTGGTGCGTCTGTGACT (Variable)