Template:  SRS055982_Baylor_scaffold_3547 strand: + 49137-49252 ref: 49137-49252
Variable:  SRS055982_Baylor_scaffold_3547 strand: + 48592-48707 alnlen 115 mutations 23 involve-A 23 involve-T 0

49137      CGGTGTCCTGTTCAGCGGTAATGCGAATAACAGCTCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCAGGTCTCGCCAATGATTT 
           ::::::::::::: ::::: ::::: :: :: :::::: :::::::::::::: :::: :::::  : :: ::::::::  : :: :::::  : :: :::::::::  :: :::
48592      CGGTGTCCTGTTCGGCGGTTATGCGTATTACGGCTCGAGTGCCGGTTTTGCGTGTGCGCATTCGTCTGACGCGCCCTCGCTTGCGCATGCGGCTGTCGGGTCTCGCCTTTGCTTT 
Template:  SRS055982_Baylor_scaffold_3547 strand: + 49140-49251 ref: 49137-49252
Variable:  SRS055982_Baylor_scaffold_3547 strand: + 8710-8821 alnlen 111 mutations 25 involve-A 25 involve-T 0

49140      TGTCCTGTTCAGCGGTAATGCGAATAACAGCTCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCAGGTCTCGCCAATGATT 
           :::::::::: :::::  ::::  :  : :::::  :::::::::::::: ::::  ::::  : :: ::::::::::: :: ::::: :: :: :::::::::  :: ::
8710       TGTCCTGTTCGGCGGTGCTGCGTCTTCCGGCTCGCTTGCCGGTTTTGCGTGTGCGTCTTCGGCTTACGCGCCCTCGAATGCGTATGCGTATGTCGGGTCTCGCCTTTGCTT