Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS055982_Baylor_scaffold_3547 strand: + 49137-49252 ref: 49137-49252

Variable:  SRS055982_Baylor_scaffold_3547 strand: + 48592-48707 alnlen 115 mutations 23 involve-A 23 involve-T 0

CGGTGTCCTGTTCAGCGGTAATGCGAATAACAGCTCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCAGGTCTCGCCAATGATTT (Template)
CGGTGTCCTGTTCGGCGGTTATGCGTATTACGGCTCGAGTGCCGGTTTTGCGTGTGCGCATTCGTCTGACGCGCCCTCGCTTGCGCATGCGGCTGTCGGGTCTCGCCTTTGCTTT (Variable)
Template:  SRS055982_Baylor_scaffold_3547 strand: + 49140-49251 ref: 49137-49252

Variable:  SRS055982_Baylor_scaffold_3547 strand: + 8710-8821 alnlen 111 mutations 25 involve-A 25 involve-T 0

TGTCCTGTTCAGCGGTAATGCGAATAACAGCTCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCAGGTCTCGCCAATGATT (Template)
TGTCCTGTTCGGCGGTGCTGCGTCTTCCGGCTCGCTTGCCGGTTTTGCGTGTGCGTCTTCGGCTTACGCGCCCTCGAATGCGTATGCGTATGTCGGGTCTCGCCTTTGCTT (Variable)