Template: SRS056259_LANL_scaffold_17268 strand: + 13771-13944 ref: 13771-13943 Variable: SRS056259_LANL_scaffold_17268 strand: + 12377-12550 alnlen 173 mutations 24 involve-A 24 involve-T 0 13771 CCCCGCTTCGGGGTATCGCAACAACAATAACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGGTAACGTGAACCCGGCGAACAACAACAACCGCTCGAACGGCTTCTCCGTGAGGT :::::::::::::: :::: :: ::::: :::::::::: : :::::::: :: ::::: ::::::::::::::::::::: ::::::::::::::::: :::: ::::::: ::::::::::: ::::::: :: ::::: ::::::: ::::::::::::::::: 12377 CCCCGCTTCGGGGTGTCGCTACGCCAATAGCGGGCAGTTGCTCTACGTGGGCTACTACGGCTACTATTGGTCGGGCTCGCCGATCGGTACGAACGGGTATAGCCTGTCCTTCAACGGTGGTAACGTGAGCCCGGCGTACTACAACGCCCGCTCGTTCGGCTTCTCCGTGAGGT Template: SRS056259_LANL_scaffold_17268 strand: + 13771-13891 ref: 13771-13943 Variable: SRS056259_LANL_scaffold_17268 strand: + 9350-9470 alnlen 120 mutations 29 involve-A 15 involve-T 4 13771 CCCCGCTTCGGGGTATCGCAACAACAATAACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGG ::: ::: ::::::: :::: :: :: ::::::::: ::::::::::: :: ::::: ::::::::::::: :: :: ::: ::: : :::::: : :: ::::: :: ::: 9350 CCCGGCTGCGGGGTACCGCACTTACGGCAATGGGCAGTTGTACAACGTGGGCTACTACGGCTACTATTGGTCGGGGTCTCCTAACAGTATAAGCGGGTACTCCTTGTACTTCCTCAGTGG