Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS056259_LANL_scaffold_17268 strand: + 13771-13944 ref: 13771-13943

Variable:  SRS056259_LANL_scaffold_17268 strand: + 12377-12550 alnlen 173 mutations 24 involve-A 24 involve-T 0

CCCCGCTTCGGGGTATCGCAACAACAATAACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGGTAACGTGAACCCGGCGAACAACAACAACCGCTCGAACGGCTTCTCCGTGAGGT (Template)
CCCCGCTTCGGGGTGTCGCTACGCCAATAGCGGGCAGTTGCTCTACGTGGGCTACTACGGCTACTATTGGTCGGGCTCGCCGATCGGTACGAACGGGTATAGCCTGTCCTTCAACGGTGGTAACGTGAGCCCGGCGTACTACAACGCCCGCTCGTTCGGCTTCTCCGTGAGGT (Variable)
Template:  SRS056259_LANL_scaffold_17268 strand: + 13771-13891 ref: 13771-13943

Variable:  SRS056259_LANL_scaffold_17268 strand: + 9350-9470 alnlen 120 mutations 29 involve-A 15 involve-T 4

CCCCGCTTCGGGGTATCGCAACAACAATAACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGG (Template)
CCCGGCTGCGGGGTACCGCACTTACGGCAATGGGCAGTTGTACAACGTGGGCTACTACGGCTACTATTGGTCGGGGTCTCCTAACAGTATAAGCGGGTACTCCTTGTACTTCCTCAGTGG (Variable)