Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS056259_LANL_scaffold_48800 strand: - 8258-8346 ref: 8259-8347

Variable:  SRS056259_LANL_scaffold_48800 strand: - 8807-8895 alnlen 88 mutations 15 involve-A 15 involve-T 0

GGCTATAGCGCTAACAATGTTCAGTATGTCAATGACGATGGCAACGTCAACTACAACTGGTGTAGCAATGATTTTGGCGTGCGTCCGT (Template)
GGCTGTAGCGCTGACGGTGTTCGGTTTGTCAATGGCGGTGGCGGCGTCAGCTGCAGCTGGTGTGGCAGTGATTTTGGCGTGCGTCCGT (Variable)
Template:  SRS056259_LANL_scaffold_48800 strand: - 8258-8346 ref: 8259-8347

Variable:  SRS056259_LANL_scaffold_48800 strand: - 41238-41326 alnlen 88 mutations 17 involve-A 17 involve-T 0

GGCTATAGCGCTAACAATGTTCAGTATGTCAATGACGATGGCAACGTCAACTACAACTGGTGTAGCAATGATTTTGGCGTGCGTCCGT (Template)
GGCTGTGGCGCTGGCGATGTTCAGTGTGTCTTTGGCGGTGGCCGCGTCGGCTACGACTGGTGTGGCAGTGATTTTGGCGTGCGTCCGT (Variable)