Template: SRS056259_LANL_scaffold_58167 strand: + 36263-36375 ref: 36263-36375 Variable: SRS056259_LANL_scaffold_58167 strand: + 35718-35830 alnlen 112 mutations 18 involve-A 16 involve-T 1 36263 GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT ::::: ::::::::::: ::::: ::::: ::::: :::::::::::::: :::: ::::: ::::::::::: :: ::::: ::::::: ::::::::: ::: : :: 35718 GGTGTTTTGTTCGGCGGGCATGCGTATAACGGCGCGTCTGCCGGGCTTTCGTTCGCGTATACGTATAACACGGCTGCGTATACGTCTGCGAATGTCGGCTCTCGGCTTTGCT Template: SRS056259_LANL_scaffold_58167 strand: + 36301-36375 ref: 36263-36375 Variable: SRS056259_LANL_scaffold_58167 strand: + 489-563 alnlen 74 mutations 13 involve-A 13 involve-T 0 36301 TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT :::::::::::::: ::::: :::: :: : ::::: :: ::::::::::: :: ::::::::: ::: : :: 489 TGCCGGGCTTTCGTGCGCGAGTACGTATGGCGCGGCTGCGTATACGAATGCGGATGTCGGCTCTCGGCTTTGCT