Template:  SRS056259_LANL_scaffold_58167 strand: + 36263-36375 ref: 36263-36375
Variable:  SRS056259_LANL_scaffold_58167 strand: + 35718-35830 alnlen 112 mutations 18 involve-A 16 involve-T 1

36263      GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           ::::: :::::::::::  ::::: ::::: :::::  :::::::::::::: :::: ::::: ::::::::::: :: :::::  ::::::: ::::::::: ::: : ::
35718      GGTGTTTTGTTCGGCGGGCATGCGTATAACGGCGCGTCTGCCGGGCTTTCGTTCGCGTATACGTATAACACGGCTGCGTATACGTCTGCGAATGTCGGCTCTCGGCTTTGCT 
Template:  SRS056259_LANL_scaffold_58167 strand: + 36301-36375 ref: 36263-36375
Variable:  SRS056259_LANL_scaffold_58167 strand: + 489-563 alnlen 74 mutations 13 involve-A 13 involve-T 0

36301      TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::: ::::: :::: ::  : ::::: :: ::::::::::: :: ::::::::: ::: : ::
489        TGCCGGGCTTTCGTGCGCGAGTACGTATGGCGCGGCTGCGTATACGAATGCGGATGTCGGCTCTCGGCTTTGCT