Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS057539_LANL_scaffold_61511 strand: + 3870-4028 ref: 3864-4028

Variable:  SRS057539_LANL_scaffold_61511 strand: + 2062-2220 alnlen 158 mutations 20 involve-A 20 involve-T 0

TCCTGCTTCGGGTTTCCGCAACAACAGCGATGGGTCGTTGAACAATGTTGGGAACAACGGTTACTATTGGTCGGCAGTTCCGAACAACACGAACAACGGTTGCAACCTGAACTTCAACTGGAGCAACGTGAACCCTCAGAACAACAACAACCGTTCGT (Template)
TCCTGCTTCGGGTTTCCGCTACTACAGCGATGGGTCGTTGGGCAATGTTGGGTACTACGGTTACTTTTGGTCGGCAGTTCCGAGCAACACGTACGACGGTTGCTTCCTGTACTTCGTCTGGAGCGGCGTGAACCCTCAGTACAACAACTGCCGTTCGT (Variable)