Template:  SRS057791_LANL_scaffold_13865 strand: - 1529-1690 ref: 1528-1690
Variable:  SRS057791_LANL_scaffold_13865 strand: - 3337-3498 alnlen 161 mutations 15 involve-A 15 involve-T 0

1690       CAGCGATGGGTCGTTGAACAATGTTGGGAACAACGGTTACTATTGGTCGGCAGTTCCGAACAACACGAACAACGGTTGCAACCTGAACTTCAACTGGAGCAACGTGAACCCTCAGAACAACAACAACCGTTCGTACGGGTTTGCGGCACGGCCAGTCTCAG (revcomp)
           ::::::::::::::::::: :::::::::::  :::::::::::::::::::::::::  :: ::::: :: :::::::: ::::::::::  :::: ::: ::::: :::::::::: ::::::::::::::::::::::::::::::::::::::::::
3498       CAGCGATGGGTCGTTGAACTATGTTGGGAACTTCGGTTACTATTGGTCGGCAGTTCCGGGCAGCACGAGCAGCGGTTGCAGCCTGAACTTCGGCTGGGGCAGCGTGAGCCCTCAGAACTACAACAACCGTTCGTACGGGTTTGCGGCACGGCCAGTCTCAG (revcomp)