Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS058770_LANL_scaffold_4025 strand: + 7236-7326 ref: 7236-7326

Variable:  SRS058770_LANL_scaffold_4025 strand: + 6479-6569 alnlen 90 mutations 9 involve-A 9 involve-T 0

CTTCCAGCAGTTGGAACGTGAACTTCAACAACGGCAACGTCAACACGAACAACCGCCAGAACGCGAACCGGGTTCGTCCCCTCGCCGCAA (Template)
CTTCCAGCAGTTGGTACGTGTACTTCAGCAGCGGCACCGTCAGCACGAACAGCCGCCAGAGCGCGTACCGGGTTCGTCCCCTCGCCGCAA (Variable)