Template:  SRS063985_LANL_scaffold_33169 strand: + 2649-2743 ref: 2649-2742
Variable:  SRS063985_LANL_scaffold_33169 strand: + 4703-4797 alnlen 94 mutations 17 involve-A 14 involve-T 0

2649       CGTCGAACCGTGCGATTCGCGGGTACAATTCGGCCCGCAACTGGAACAACAACAATGCTACGAACTCCAACCCGAA-CGTCGGTTTCCGCCCCG 
           :::::  ::::::: ::::::::::::::::::::::: :::::::: :: :: ::::: ::  ::::  :::    : :::::::::::::::
4703       CGTCGGGCCGTGCGGTTCGCGGGTACAATTCGGCCCGCTACTGGAACTACTACTATGCTTCGCTCTCCTTCCCCTTTCCTCGGTTTCCGCCCCG