Template: SRS063985_LANL_scaffold_33169 strand: + 2649-2743 ref: 2649-2742 Variable: SRS063985_LANL_scaffold_33169 strand: + 4703-4797 alnlen 94 mutations 17 involve-A 14 involve-T 0 2649 CGTCGAACCGTGCGATTCGCGGGTACAATTCGGCCCGCAACTGGAACAACAACAATGCTACGAACTCCAACCCGAA-CGTCGGTTTCCGCCCCG ::::: ::::::: ::::::::::::::::::::::: :::::::: :: :: ::::: :: :::: ::: : ::::::::::::::: 4703 CGTCGGGCCGTGCGGTTCGCGGGTACAATTCGGCCCGCTACTGGAACTACTACTATGCTTCGCTCTCCTTCCCCTTTCCTCGGTTTCCGCCCCG