Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS063985_LANL_scaffold_33169 strand: + 2649-2743 ref: 2649-2742

Variable:  SRS063985_LANL_scaffold_33169 strand: + 4703-4797 alnlen 94 mutations 17 involve-A 14 involve-T 0

CGTCGAACCGTGCGATTCGCGGGTACAATTCGGCCCGCAACTGGAACAACAACAATGCTACGAACTCCAACCCGAA-CGTCGGTTTCCGCCCCG (Template)
CGTCGGGCCGTGCGGTTCGCGGGTACAATTCGGCCCGCTACTGGAACTACTACTATGCTTCGCTCTCCTTCCCCTTTCCTCGGTTTCCGCCCCG (Variable)