Template:  SRS063985_LANL_scaffold_57289 strand: - 2342-2449 ref: 2341-2450
Variable:  SRS063985_LANL_scaffold_57289 strand: - 3936-4043 alnlen 107 mutations 13 involve-A 13 involve-T 0

2449       CTTCGTGGTGGGTCCTTCAACAACGCATACGCGAGCAACCCTGCTTGTTACCGTGAATACAATTATGCCCCTAATACTAACACGAACAACGGGTTCCGTCCAGTACT (revcomp)
           :::::::::::::::::: :: :::: : :::::::: ::::::::::::::::::::::  :::::::::: :::::  ::::: :  ::::::::::::::::::
4043       CTTCGTGGTGGGTCCTTCTACGACGCGTGCGCGAGCAGCCCTGCTTGTTACCGTGAATACCTTTATGCCCCTTATACTGGCACGAGCTTCGGGTTCCGTCCAGTACT (revcomp)