Template: SRS063985_LANL_scaffold_57289 strand: - 2342-2449 ref: 2341-2450 Variable: SRS063985_LANL_scaffold_57289 strand: - 3936-4043 alnlen 107 mutations 13 involve-A 13 involve-T 0 2449 CTTCGTGGTGGGTCCTTCAACAACGCATACGCGAGCAACCCTGCTTGTTACCGTGAATACAATTATGCCCCTAATACTAACACGAACAACGGGTTCCGTCCAGTACT (revcomp) :::::::::::::::::: :: :::: : :::::::: :::::::::::::::::::::: :::::::::: ::::: ::::: : :::::::::::::::::: 4043 CTTCGTGGTGGGTCCTTCTACGACGCGTGCGCGAGCAGCCCTGCTTGTTACCGTGAATACCTTTATGCCCCTTATACTGGCACGAGCTTCGGGTTCCGTCCAGTACT (revcomp)