Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS063985_LANL_scaffold_57289 strand: - 2342-2449 ref: 2341-2450

Variable:  SRS063985_LANL_scaffold_57289 strand: - 3936-4043 alnlen 107 mutations 13 involve-A 13 involve-T 0

CTTCGTGGTGGGTCCTTCAACAACGCATACGCGAGCAACCCTGCTTGTTACCGTGAATACAATTATGCCCCTAATACTAACACGAACAACGGGTTCCGTCCAGTACT (Template)
CTTCGTGGTGGGTCCTTCTACGACGCGTGCGCGAGCAGCCCTGCTTGTTACCGTGAATACCTTTATGCCCCTTATACTGGCACGAGCTTCGGGTTCCGTCCAGTACT (Variable)