Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS063985_LANL_scaffold_8871 strand: - 5091-5201 ref: 5092-5202

Variable:  SRS063985_LANL_scaffold_8871 strand: - 5350-5460 alnlen 110 mutations 12 involve-A 12 involve-T 0

TAGCGTTTGCTGGGGGTAATTTCAACAATGGTGCTAATGATGGGTTCTTTTACTTGAATTTGAACAATGGTTCCGGCAATTCGAACTGGAATTACGGGGCTCGCCTACTT (Template)
TAGCGTTTGCTGGGGGTTATTTCCTCTATGGTGCTGGTGTTGGGTTCTTTTGCTTGACTTTGAACAATGGTTCCGGCAATTCGTACTGGAGTTACGGGGCTCGCCTTCTT (Variable)