Template:  SRS064276_LANL_scaffold_12382 strand: + 41598-41715 ref: 41598-41715
Variable:  SRS064276_LANL_scaffold_12382 strand: + 40877-40994 alnlen 117 mutations 11 involve-A 11 involve-T 0

41598      CGGTGCCTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTTTT 
           :::::::::::::::::::::  ::::  :::::::::: :::::::::::::: :::::: ::::: ::::::::::::: :::::  ::::::::::::::::::::::::::::
40877      CGGTGCCTGATTCGCGGTGGCGGCTGGCCCAATGGCGGCGACGCTGGGGTGTTCGATTCCAGCCTGAGCAACCCGCGCTCCTATGCCTGCGGCAACATCGGGGGCCGTTCCGCTTTT 
Template:  SRS064276_LANL_scaffold_12382 strand: + 41604-41713 ref: 41598-41715
Variable:  SRS064276_LANL_scaffold_12382 strand: + 2580-2689 alnlen 109 mutations 11 involve-A 11 involve-T 0

41604      CTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTT 
           :::::::::::::::::::::  :  :::::::  ::::::::::::: ::::: :::::: ::::::::::::::::::: ::::: :::::::::::::::::::::
2580       CTGATTCGCGGTGGCAACTGGGCCGTTGGCGGCCGCGCTGGGGTGTTCCATTCCTACCTGAGCAACCCGCGCTCCAATGCCTACGGCGACATCGGGGGCCGTTCCGCTT 
Template:  SRS064276_LANL_scaffold_12382 strand: + 41621-41705 ref: 41598-41715
Variable:  SRS064276_LANL_scaffold_12382 strand: + 2699-2783 alnlen 84 mutations 14 involve-A 14 involve-T 0

41621      CTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCG 
           ::::  ::::::::::  ::::::::::::: :::::  ::::  :: :::::::::: ::::: ::::: :: ::::::::::
2699       CTGGGGCAATGGCGGCGGCGCTGGGGTGTTCTATTCCGGCCTGGGCAGCCCGCGCTCCTATGCCTACGGCGACGTCGGGGGCCG