Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS064276_LANL_scaffold_12382 strand: + 41598-41715 ref: 41598-41715

Variable:  SRS064276_LANL_scaffold_12382 strand: + 40877-40994 alnlen 117 mutations 11 involve-A 11 involve-T 0

CGGTGCCTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTTTT (Template)
CGGTGCCTGATTCGCGGTGGCGGCTGGCCCAATGGCGGCGACGCTGGGGTGTTCGATTCCAGCCTGAGCAACCCGCGCTCCTATGCCTGCGGCAACATCGGGGGCCGTTCCGCTTTT (Variable)
Template:  SRS064276_LANL_scaffold_12382 strand: + 41604-41713 ref: 41598-41715

Variable:  SRS064276_LANL_scaffold_12382 strand: + 2580-2689 alnlen 109 mutations 11 involve-A 11 involve-T 0

CTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTT (Template)
CTGATTCGCGGTGGCAACTGGGCCGTTGGCGGCCGCGCTGGGGTGTTCCATTCCTACCTGAGCAACCCGCGCTCCAATGCCTACGGCGACATCGGGGGCCGTTCCGCTT (Variable)
Template:  SRS064276_LANL_scaffold_12382 strand: + 41621-41705 ref: 41598-41715

Variable:  SRS064276_LANL_scaffold_12382 strand: + 2699-2783 alnlen 84 mutations 14 involve-A 14 involve-T 0

CTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCG (Template)
CTGGGGCAATGGCGGCGGCGCTGGGGTGTTCTATTCCGGCCTGGGCAGCCCGCGCTCCTATGCCTACGGCGACGTCGGGGGCCG (Variable)