Template: SRS064423_LANL_scaffold_46697 strand: - 12482-12677 ref: 12484-12678 Variable: SRS064423_LANL_scaffold_46697 strand: - 14292-14487 alnlen 195 mutations 30 involve-A 22 involve-T 1 12677 TCTTACCTCCTGCTTCGGGTTTCCGCAACAACAGCGATGGGTCGTTGAACAATGTTGGGAACAACGGTTA-CTATTGGTCGGCAGTTCCGAACAACACGAACAACGGTTGCAACCTGAACTTCAACTGGAGCAACGTGAACCCTCAGA--ACAACAACAACCGTTCGTACGGGTTTGCGGCACGGTCAGTCTCAG (revcomp) :::: :::::::::::::::::::::: ::::::::::::::::: ::::::::::: ::::::: : :: ::::::::::::::::: :: :: : :: ::::::: ::::: ::::: :::: :: ::::: :::::::: :: :::: ::::::::::::::::::::::::::::::::::: 14487 TCTTCTTTCCTGCTTCGGGTTTCCGCAACTACAGCGATGGGTCGTTGGACAATGTTGGGTACAACGGGTGTCTGTTGGTCGGCAGTTCCGAGCAGCATGGGCAGCGGTTGCCACCTGTACTTCGGCTGGGGCTACGTGGGCCCTCAGAGGACGACAAATTCCGTTCGTACGGGTTTGCGGCACGGTCAGTCTCAG (revcomp)